actions-marketplace-validations/snakemake

Run Snakemake on the repository

Trust Signals

Scorecard Score: not yet scored
Maintenance Recency: Activelast commit Mar 27, 2026
License: MIT

Pinned Snippet

workflow.ymlSHA-pinned

uses: actions-marketplace-validations/snakemake_snakemake-github-action@53480513a6eb46f79126e4f7415fd7a5ecf83092 # no releases — HEAD as of 2026-07-13

tags can be moved; commit SHAs can't. why a SHA?

Inputs

name	description	required	default
directory	Working directory for the execution	yes	.test
snakefile	Snakefile containing the workflow description	—	Snakefile
args	Additional Snakemake arguments to use	no	""
stagein	Additional steps to prepare the workflow for execution	no	""
task	Whether to run Snakemake or to generate a container image specification.	no	run
show-disk-usage-on-error	Whether to return the used disk space on failing.	no	false
snakemake-version	Snakemake version to use. If not specified, uses latest version. Pin a specific version (e.g., '8.25.5') for reproducibility.	no	*
snakemake-branch	Optional Snakemake git branch to install from https://github.com/snakemake/snakemake. If set, this takes precedence over snakemake-version and Snakemake is installed via pip.	no	""
install-apptainer	Install Apptainer (true/false)	no	false

Outputs

no outputs