snakemake/snakemake

Run Snakemake on the repository

Trust Signals

name	description	required	default
directory	Working directory for the execution	yes	.test
snakefile	Snakefile containing the workflow description	—	Snakefile
args	Additional Snakemake arguments to use	no	""
stagein	Additional steps to prepare the workflow for execution	no	""
task	Whether to run Snakemake or to generate a container image specification.	no	run
show-disk-usage-on-error	Whether to return the used disk space on failing.	no	false
snakemake-version	Snakemake version to use. If not specified, uses latest version. Pin a specific version (e.g., '8.25.5') for reproducibility.	no	*
snakemake-branch	Optional Snakemake git branch to install from https://github.com/snakemake/snakemake. If set, this takes precedence over snakemake-version and Snakemake is installed via pip.	no	""
install-apptainer	Install Apptainer (true/false)	no	false
containerize-args	Additional arguments for --containerize, can be one of 'dockerfile', 'apptainer' or '' (defaults to dockerfile)	no	""

no outputs